Apertium
Take the alignment symmetriser from cdec and make it standalone.
Cdec has a great program for creating word alignments called fast_align.
http://wiki.apertium.org/wiki/Alining_a_corpus_with_fast_align
It also has a program (atool) that will calculate symmetrised alignments:
http://www.cdec-decoder.org/guide/fast_align.html
Unfortunately you have to download all of cdec. The objective of this task is to take the atool program and make it a standalone app.
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matthew